Microbial food web

The microbial food web refers the combined trophic interactions among microbes in aquatic environments. These microbes include viruses, bacteria, algae, heterotrophic protists (such as ciliates and flagellates).

In aquatic environments, microbes constitute the base of the food web. Single celled photosynthetic organisms such as diatoms and cyanobacteria are generally the most important primary producers in the open ocean. Many of these cells, especially cyanobacteria, are too small to be captured and consumed by small crustaceans and planktonic larvae. Instead, these cells are consumed by phagotrophic protists which are readily consumed by larger organisms. Viruses can infect and break open bacterial cells and (to a lesser extent), planktonic algae (a.k.a. phytoplankton). Therefore, viruses in the microbial food web act to reduce the population of bacteria and, by lysing bacterial cells, release particulate and dissolved organic carbon (DOC). DOC may also be released into the environment by algal cells. One of the reasons phytoplankton release DOC termed "unbalanced growth" is when essential nutrients (e.g. nitrogen and phosphorus) are limiting. Therefore, carbon produced during photosynthesis is not used for the synthesis of proteins (and subsequent cell growth), but is limited due of a lack of the nutrients necessary for macromolecules. Excess photosynthate, or DOC is then released, or exuded.

The microbial loop describes a pathway in the microbial food web where DOC is returned to higher trophic levels via the incorporation into bacterial biomass.

General	Acoustic ecology Adaptation Agent-based models Algal bloom Anoxic waters Aquatic animals (Insects Mammals) Aquatic plants Aquatic science Benthos Biodiversity research Bioluminescence Biomass Biomonitoring Cascade effect Colored dissolved organic matter Camouflage and mimicry Dead zone Ecohydrology Ecosystems Eutrophication Fisheries science Food chain Food web GIS and aquatic science Hydrobiology Hypoxia Isotope analysis Microbial ecology Microbial food web Microbial loop Nekton Neuston Particle Pelagic zone Photic zone Phytoplankton Plankton Pleuston Predation Productivity Ramsar Convention Respiration Schooling Sediment trap Siltation Spawning Substrate Thermal pollution Toxicology Trophic level Water column Zooplankton More...

Freshwater	Biology Biomes Ecosystems freshwater lake river Fish Hyporheic zone Limnology Lake stratification Macrophyte Pond Fish pond Rheotaxis Stream bed Stream pool Trophic state index Upland and lowland Water garden Wetland brackish marsh freshwater marsh swamp bog fen Environmental quality More...

Ecoregions	Freshwater (List) Marine (List) The Everglades Maharashtra The North Pacific Subtropical Gyre The San Francisco Estuary

Aquatic ecosystems – marine components

Marine	Marine biology Marine chemistry Deep scattering layer Diel vertical migration Ecosystems large marine marine) f-ratio Iron fertilization Marine snow Ocean nourishment Oceanic physical-biological process Ocean turbidity Photophore Thorson's rule Upwelling Whale fall More...

Marine life	Bacteriophages Census Fish coastal coral reef deep sea demersal pelagic Deep sea communities Deep sea creature Deep-water coral Invertebrates Larvae Mammals Marine life Microorganisms Paradox of the plankton Reptiles Seabirds Seashore wildlife Vertebrates Wild fisheries

Marine habitats	Bay mud Black smokers Coastal biogeomorphology Cold seeps Coral reefs Davidson Seamount Estuaries Intertidal ecology Intertidal wetlands Kelp forests Hydrothermal vents Lagoons Mangroves Marine biomes Marine habitats Mudflats Rocky shores Salt marshes Salt pannes and pools Seagrass meadows Sponge reefs Tide pools

Issues	Ecological values of mangroves Fisheries and climate change HERMIONE Marine conservation Marine conservation activism Marine pollution Marine Protected Area

Ecology: Modelling ecosystems: Trophic components

General	Abiotic component Abiotic stress Behaviour Biogeochemical cycle Biomass Biotic component Biotic stress Carrying capacity Competition Ecosystem Ecosystem ecology Ecosystem model Keystone species List of feeding behaviours Metabolic theory of ecology Productivity Resource

Producers	Autotrophs Chemosynthesis Chemotrophs Foundation species Mixotrophs Myco-heterotrophy Mycotroph Organotrophs Photoheterotrophs Photosynthesis Photosynthetic efficiency Phototrophs Primary nutritional groups Primary production

Consumers	Apex predator Bacterivore Carnivores Chemoorganotroph Foraging Generalist and specialist species Intraguild predation Herbivores Heterotroph Heterotrophic nutrition Insectivore Mesopredator release hypothesis Omnivores Optimal foraging theory Predation Prey switching

Decomposers	Chemoorganoheterotrophy Decomposition Detritivores Detritus

Microorganisms	Archaea Bacteriophage Environmental microbiology Lithoautotroph Lithotrophy Microbial cooperation Microbial ecology Microbial food web Microbial intelligence Microbial loop Microbial mat Microbial metabolism Phage ecology

Food webs	Biomagnification Ecological efficiency Ecological pyramid Energy flow Food chain Trophic level

Example webs	Cold seeps Hydrothermal vents Intertidal Kelp forests Lakes North Pacific Subtropical Gyre Rivers San Francisco Estuary Soil Tide pool

Processes	Ascendency Bioaccumulation Cascade effect Climax community Competitive exclusion principle Consumer-resource systems Copiotrophs Dominance Ecological network Ecological succession Energy quality Energy Systems Language f-ratio Feed conversion ratio Feeding frenzy Mesotrophic soil Nutrient cycle Oligotroph Paradox of the plankton Trophic cascade Trophic mutualism Trophic state index

Defense/counter	Animal coloration Antipredator adaptations Camouflage Deimatic behaviour Herbivore adaptations to plant defense Mimicry Plant defense against herbivory Predator avoidance in schooling fish

Ecology: Modelling ecosystems: Other components

Population ecology	Abundance Allee effect Depensation Ecological yield Effective population size Intraspecific competition Logistic function Malthusian growth model Maximum sustainable yield Overpopulation in wild animals Overexploitation Population cycle Population dynamics Population modeling Population size Predator–prey (Lotka–Volterra) equations Recruitment Resilience Small population size Stability

Species	Biodiversity Density-dependent inhibition Ecological effects of biodiversity Ecological extinction Endemic species Flagship species Gradient analysis Indicator species Introduced species Invasive species Latitudinal gradients in species diversity Minimum viable population Neutral theory Occupancy–abundance relationship Population viability analysis Priority effect Rapoport's rule Relative abundance distribution Relative species abundance Species diversity Species homogeneity Species richness Species distribution Species-area curve Umbrella species

Species interaction	Antibiosis Biological interaction Commensalism Community ecology Ecological facilitation Interspecific competition Mutualism Storage effect

Spatial ecology	Biogeography Cross-boundary subsidy Ecocline Ecotone Ecotype Disturbance Edge effects Foster's rule Habitat fragmentation Ideal free distribution Intermediate Disturbance Hypothesis Island biogeography Landscape ecology Landscape epidemiology Landscape limnology Metapopulation Patch dynamics r/K selection theory Source–sink dynamics

Niche	Ecological niche Ecological trap Ecosystem engineer Environmental niche modelling Guild Habitat Marine habitats Limiting similarity Niche apportionment models Niche construction Niche differentiation

Other networks	Assembly rules Bateman's principle Bioluminescence Ecological collapse Ecological debt Ecological deficit Ecological energetics Ecological indicator Ecological threshold Ecosystem diversity Emergence Extinction debt Kleiber's law Liebig's law of the minimum Marginal value theorem Thorson's rule Xerosere

Other	Allometry Alternative stable state Balance of nature Biological data visualization Constructal theory Ecocline Ecological economics Ecological footprint Ecological forecasting Ecological humanities Ecological stoichiometry Ecopath Ecosystem based fisheries Endolith Evolutionary ecology Functional ecology Industrial ecology Macroecology Microecosystem Natural environment Regime shift Systems ecology Urban ecology Theoretical ecology

List of ecology topics

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Microbial food web

See also