Fibronectin

FN1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1E88, 1E8B, 1FBR, 1FNA, 1FNF, 1FNH, 1J8K, 1O9A, 1OWW, 1Q38, 1QGB, 1QO6, 1TTF, 1TTG, 2CG6, 2CG7, 2CK2, 2CKU, 2EC3, 2FN2, 2FNB, 2GEE, 2H41, 2H45, 2HA1, 2OCF, 2RKY, 2RKZ, 2RL0, 3CAL, 3EJH, 3GXE, 3M7P, 3MQL, 3R8Q, 3ZRZ, 4GH7, 4JE4, 4JEG, 4LXO, 4MMX, 4MMY, 4MMZ, 4PZ5, 2N1K, 5DC4, 5DC0, 5DC9, 3T1W
Identifiers
Aliases	FN1, CIG, ED-B, FINC, FN, FNZ, GFND, GFND2, LETS, MSF, fibronectin 1
External IDs	OMIM: 135600 MGI: 95566 HomoloGene: 1533 GeneCards: FN1
Gene ontology Molecular function • heparin binding • collagen binding • integrin binding • protein binding • identical protein binding • peptidase activator activity • protease binding Cellular component • blood microparticle • extracellular matrix • proteinaceous extracellular matrix • fibrinogen complex • basal lamina • extracellular region • basement membrane • apical plasma membrane • extracellular exosome • platelet alpha granule lumen • endoplasmic reticulum-Golgi intermediate compartment • extracellular space Biological process • regulation of protein phosphorylation • calcium-independent cell-matrix adhesion • endodermal cell differentiation • positive regulation of fibroblast proliferation • positive regulation of substrate-dependent cell migration, cell attachment to substrate • negative regulation of transforming growth factor-beta secretion • platelet degranulation • extracellular matrix disassembly • wound healing • positive regulation of peptidase activity • peptide cross-linking • cell adhesion • positive regulation of gene expression • acute-phase response • angiogenesis • positive regulation of cell proliferation • regulation of cell shape • regulation of ERK1 and ERK2 cascade • cell-substrate junction assembly • substrate adhesion-dependent cell spreading • integrin activation • positive regulation of axon extension • cell-matrix adhesion • leukocyte migration • response to wounding • extracellular matrix organization Sources:Amigo / QuickGO
RNA expression pattern
More reference expression data
Orthologs
Species	Human	Mouse
Entrez	2335	14268
Ensembl	ENSG00000115414	ENSMUSG00000026193
UniProt	P02751	P11276
RefSeq (mRNA)	NM_001306129 NM_001306130 NM_001306131 NM_001306132 NM_002026 NM_054034 NM_212474 NM_212475 NM_212476 NM_212478 NM_212482	NM_001276408 NM_001276409 NM_001276410 NM_001276411 NM_001276412 NM_001276413 NM_010233
RefSeq (protein)	NP_001293058.1 NP_001293059.1 NP_001293060.1 NP_001293061.1 NP_002017.1 NP_473375.2 NP_997639.1 NP_997641.1 NP_997643.1 NP_997647.1 NP_001293058.1 NP_001293059.1 NP_001293061.1	NP_034363.1
Location (UCSC)	Chr 2: 215.36 – 215.44 Mb	Chr 1: 71.59 – 71.65 Mb
PubMed search	[1]	[2]
Wikidata

The modular structure of fibronectin and its binding domains

Fibronectin is a high-molecular weight (~440kDa) glycoprotein of the extracellular matrix that binds to membrane-spanning receptor proteins called integrins.^[3] Similar to integrins, fibronectin binds extracellular matrix components such as collagen, fibrin, and heparan sulfate proteoglycans (e.g. syndecans).

Fibronectin exists as a protein dimer, consisting of two nearly identical monomers linked by a pair of disulfide bonds.^[3] The fibronectin protein is produced from a single gene, but alternative splicing of its pre-mRNA leads to the creation of several isoforms.

Two types of fibronectin are present in vertebrates:^[3]

• soluble plasma fibronectin (formerly called "cold-insoluble globulin", or CIg) is a major protein component of blood plasma (300 μg/ml) and is produced in the liver by hepatocytes.
• insoluble cellular fibronectin is a major component of the extracellular matrix. It is secreted by various cells, primarily fibroblasts, as a soluble protein dimer and is then assembled into an insoluble matrix in a complex cell-mediated process.

Fibronectin plays a major role in cell adhesion, growth, migration, and differentiation, and it is important for processes such as wound healing and embryonic development.^[3] Altered fibronectin expression, degradation, and organization has been associated with a number of pathologies, including cancer and fibrosis.^[4]

Structure

Fibronectin exists as a protein dimer, consisting of two nearly identical polypeptide chains linked by a pair of C-terminal disulfide bonds.^[5] Each fibronectin subunit has a molecular weight of 230–250 kDa and contains three types of modules: type I, II, and III. All three modules are composed of two anti-parallel β-sheets resulting in a Beta-sandwich; however, type I and type II are stabilized by intra-chain disulfide bonds, while type III modules do not contain any disulfide bonds. The absence of disulfide bonds in type III modules allows them to partially unfold under applied force.^[6]

Three regions of variable splicing occur along the length of the fibronectin protomer. One or both of the "extra" type III modules (EIIIA and EIIIB) may be present in cellular fibronectin, but they are never present in plasma fibronectin. A "variable" V-region exists between III_14–15 (the 14th and 15th type III module). The V-region structure is different from the type I, II, and III modules, and its presence and length may vary. The V-region contains the binding site for α4β1 integrins. It is present in most cellular fibronectin, but only one of the two subunits in a plasma fibronectin dimer contains a V-region sequence.

The modules are arranged into several functional and protein-binding domains along the length of a fibronectin monomer. There are four fibronectin-binding domains, allowing fibronectin to associate with other fibronectin molecules.^[5] One of these fibronectin-binding domains, I_1–5, is referred to as the "assembly domain", and it is required for the initiation of fibronectin matrix assembly. Modules III_9–10 correspond to the "cell-binding domain" of fibronectin. The RGD sequence (Arg–Gly–Asp) is located in III₁₀ and is the site of cell attachment via α5β1 and αVβ3 integrins on the cell surface. The "synergy site" is in III₉ and has a role in modulating fibronectin's association with α5β1 integrins.^[7] Fibronectin also contains domains for fibrin-binding (I_1–5, I_10–12), collagen-binding (I_6–9), fibulin-1-binding (III_13–14), heparin-binding and syndecan-binding (III_12–14).^[5]

Function

Fibronectin has numerous functions that ensure the normal functioning of vertebrate organisms.^[3] It is involved in cell adhesion, growth, migration, and differentiation. Cellular fibronectin is assembled into the extracellular matrix, an insoluble network that separates and supports the organs and tissues of an organism.

Fibronectin plays a crucial role in wound healing.^[8][9] Along with fibrin, plasma fibronectin is deposited at the site of injury, forming a blood clot that stops bleeding and protects the underlying tissue. As repair of the injured tissue continues, fibroblasts and macrophages begin to remodel the area, degrading the proteins that form the provisional blood clot matrix and replacing them with a matrix that more resembles the normal, surrounding tissue. Fibroblasts secrete proteases, including matrix metalloproteinases, that digest the plasma fibronectin, and then the fibroblasts secrete cellular fibronectin and assemble it into an insoluble matrix. Fragmentation of fibronectin by proteases has been suggested to promote wound contraction, a critical step in wound healing. Fragmenting fibronectin further exposes its V-region, which contains the site for α4β1 integrin binding. These fragments of fibronectin are believed to enhance the binding of α4β1 integrin-expressing cells, allowing them to adhere to and forcefully contract the surrounding matrix.

Fibronectin is necessary for embryogenesis, and inactivating the gene for fibronectin results in early embryonic lethality.^[10] Fibronectin is important for guiding cell attachment and migration during embryonic development. In mammalian development, the absence of fibronectin leads to defects in mesodermal, neural tube, and vascular development. Similarly, the absence of a normal fibronectin matrix in developing amphibians causes defects in mesodermal patterning and inhibits gastrulation.^[11]

Fibronectin is also found in normal human saliva, which helps prevent colonization of the oral cavity and pharynx by potentially pathogenic bacteria.^[12]

Matrix assembly

Cellular fibronectin is assembled into an insoluble fibrillar matrix in a complex cell-mediated process.^[13] Fibronectin matrix assembly begins when soluble, compact fibronectin dimers are secreted from cells, often fibroblasts. These soluble dimers bind to α5β1 integrin receptors on the cell surface and aid in clustering the integrins. The local concentration of integrin-bound fibronectin increases, allowing bound fibronectin molecules to more readily interact with one another. Short fibronectin fibrils then begin to form between adjacent cells. As matrix assembly proceeds, the soluble fibrils are converted into larger insoluble fibrils that comprise the extracellular matrix.

Fibronectin’s shift from soluble to insoluble fibrils proceeds when cryptic fibronectin-binding sites are exposed along the length of a bound fibronectin molecule. Cells are believed to stretch fibronectin by pulling on their fibronectin-bound integrin receptors. This force partially unfolds the fibronectin ligand, unmasking cryptic fibronectin-binding sites and allowing nearby fibronectin molecules to associate. This fibronectin-fibronectin interaction enables the soluble, cell-associated fibrils to branch and stabilize into an insoluble fibronectin matrix.

Role in cancer

Several of the morphological changes observed in tumors and tumor-derived cell lines have been attributed to decreased fibronectin expression, increased fibronectin degradation, and/or decreased expression of fibronectin-binding receptors, such as α5β1 integrins.^[14]

Fibronectin has been implicated in carcinoma development.^[15] In lung carcinoma, fibronectin expression is increased, especially in non-small cell lung carcinoma. The adhesion of lung carcinoma cells to fibronectin enhances tumorigenicity and confers resistance to apoptosis-inducing chemotherapeutic agents. Fibronectin has been shown to stimulate the gonadal steroids that interact with vertebrate androgen receptors, which are capable of controlling the expression of cyclin D and related genes involved in cell cycle control. These observations suggest that fibronectin may promote lung tumor growth/survival and resistance to therapy, and it could represent a novel target for the development of new anticancer drugs.

Fibronectin 1 acts as a potential biomarker for radioresistance.^[16]

FN1-FGFR1 fusion is frequent in phosphaturic mesenchymal tumours.^[17][18]

Role in wound healing

Fibronectin has profound effects on wound healing, including the formation of proper substratum for migration and growth of cells during the development and organization of granulation tissue, as well as remodeling and resynthesis of the connective tissue matrix.^[19] The biological significance of fibronectin in vivo was studied during the mechanism of wound healing.^[19] Plasma fibronectin levels are decreased in acute inflammation or following surgical trauma and in patients with disseminated intravascular coagulation.^[20]

Fibronectin is located in the extracellular matrix of embryonic and adult tissues (not in the basement membranes of the adult tissues), but may be more widely distributed in inflammatory lesions. During blood clotting, the fibronectin remains associated with the clot, covalently cross-linked to fibrin with the help of Factor XIII (fibrin-stabilizing factor).^[21][22] Fibroblasts play a major role in wound healing by adhering to fibrin. Fibroblast adhesion to fibrin requires fibronectin, and was strongest when the fibronectin was cross-linked to the fibrin. Patients with Factor XIII deficiencies display impairment in wound healing as fibroblasts don't grow well in fibrin lacking Factor XIII. Fibronectin promotes particle phagocytosis by both macrophages and fibroblasts. Collagen deposition at the wound site by fibroblasts takes place with the help of fibronectin. Fibronectin was also observed to be closely associated with the newly deposited collagen fibrils. Based on the size and histological staining characteristics of the fibrils, it is likely that at least in part they are composed of type III collagen (reticulin). An in vitro study with native collagen demonstrated that fibronectin binds to type III collagen rather than other types.^[23]

In vivo vs in vitro

Plasma fibronectin, which is synthesized by hepatocytes,^[24] and fibronectin synthesized by cultured fibroblasts are similar but not identical; immunological, structural, and functional differences have been reported.^[25] It is likely that these differences result from differential processing of a single nascent mRNA. Nevertheless, plasma fibronectin can be insolubilized into the tissue extracellular matrix in vitro and in vivo. Both plasma and cellular fibronectins in the matrix form high molecular weight, disulfide-bonded multimers. The mechanism of formation of these multimers is not presently known. Plasma fibronectin has been shown to contain two free sulfhydryls per subunit (X), and cellular fibronectin has been shown to contain at least one. These sulfhydryls probably are buried within the tertiary structure, because sulfhydryls are exposed when the fibronectin is denatured. Such denaturation results in the oxidation of free sulfhydryls and formation of disulfide-bonded fibronectin multimers. This has led to speculation that the free sulfhydryls may be involved in formation of disulfide-bonded fibronectin multimers in the extracellular matrix. Consistent with this, sulfhydryl modification of fibronectin with N-ethylmaleimide prevents binding to cell layers. Tryptic cleavage patterns of multimeric fibronectin do not reveal the disulfide-bonded fragments that would be expected if multimerization involved one or both of the free sulfhydryls. The free sulfhydryls of fibronectin are not required for the binding of fibronectin to the cell layer or for its subsequent incorporation into the extracellular matrix. Disulfide-bonded multimerization of fibronectin in the cell layer occurs by disulfide bond exchange in the disulfide-rich amino-terminal one-third of the molecule.^[25]

Interactions

Besides integrin, fibronectin binds to many other host and non-host molecules. For example, it has been shown to interact with proteins such fibrin, tenascin, TNF-α, BMP-1, rotavirus NSP-4, and many fibronectin-binding proteins from bacteria (like FBP-A; FBP-B on the N-terminal domain), as well as the glycosaminoglycan, heparan sulfate.

Fibronectin has been shown to interact with:

• CD44^[26]
• COL7A1,^[27][28]
• LPA,^[29]
• IGFBP3,^[30][31]
• TNC,^[32] and
• TRIB3.^[33]

See also

• Fetal fibronectin
• Fibronectin type I domain
• Fibronectin type II domain
• Fibronectin type III domain
• Monobody, an engineered antibody mimetic based on the structure of the fibronectin type III domain
• Substrate adhesion molecules

References

Further reading

External links

• Fibronectin, an Extracellular Adhesion Molecule
• The Fibronectin Protein
• Fibronectin at the US National Library of Medicine Medical Subject Headings (MeSH)
• Fibronectin molecular interactions

PDB gallery
1e88: SOLUTION STRUCTURE OF 6F11F22F2, A COMPACT THREE-MODULE FRAGMENT OF THE GELATIN-BINDING DOMAIN OF HUMAN FIBRONECTIN  1e8b: SOLUTION STRUCTURE OF 6F11F22F2, A COMPACT THREE-MODULE FRAGMENT OF THE GELATIN-BINDING DOMAIN OF HUMAN FIBRONECTIN  1fbr: FOURTH AND FIFTH FIBRONECTIN TYPE I MODULE PAIR  1fna: CRYSTAL STRUCTURE OF THE TENTH TYPE III CELL ADHESION MODULE OF HUMAN FIBRONECTIN  1fnf: FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10  1fnh: CRYSTAL STRUCTURE OF HEPARIN AND INTEGRIN BINDING SEGMENT OF HUMAN FIBRONECTIN  1j8k: NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN, NMR, 20 STRUCTURES  1o9a: SOLUTION STRUCTURE OF THE COMPLEX OF 1F12F1 FROM FIBRONECTIN WITH B3 FROM FNBB FROM S. DYSGALACTIAE  1oww: Solution structure of the first type III module of human fibronectin determined by 1H, 15N NMR spectroscopy  1q38: Anastellin  1qgb: SOLUTION STRUCTURE OF THE N-TERMINAL F1 MODULE PAIR FROM HUMAN FIBRONECTIN  1qo6: SOLUTION STRUCTURE OF A PAIR OF MODULES FROM THE GELATIN-BINDING DOMAIN OF FIBRONECTIN  1ttf: THE THREE-DIMENSIONAL STRUCTURE OF THE TENTH TYPE III MODULE OF FIBRONECTIN: AN INSIGHT INTO RGD-MEDIATED INTERACTIONS  1ttg: THE THREE-DIMENSIONAL STRUCTURE OF THE TENTH TYPE III MODULE OF FIBRONECTIN: AN INSIGHT INTO RGD-MEDIATED INTERACTIONS  2cg6: SECOND AND THIRD FIBRONECTIN TYPE I MODULE PAIR (CRYSTAL FORM I).  2cg7: SECOND AND THIRD FIBRONECTIN TYPE I MODULE PAIR (CRYSTAL FORM II).  2cku: SOLUTION STRUCTURE OF 2F13F1 FROM HUMAN FIBRONECTIN  2fn2: SOLUTION NMR STRUCTURE OF THE GLYCOSYLATED SECOND TYPE TWO MODULE OF FIBRONECTIN, 20 STRUCTURES  2fnb: NMR STRUCTURE OF THE FIBRONECTIN ED-B DOMAIN, NMR, 20 STRUCTURES  2gee: Crystal Structure of Human Type III Fibronectin Extradomain B and Domain 8  2h41: Solution structure of the second type III domain of human Fibronectin: minimized average structure  2h45: Solution structure of the second type III domain of human Fibronectin: ensemble of 25 structures  2ha1: Complex of the first and second type III domains of human Fibronectin in solution