ZBED1

ZBED1

Available structures

Human UniProt search: PDBe RCSB

List of PDB id codes
2CT5

Identifiers

ZBED1, ALTE, DREF, TRAMP, hDREF, zinc finger BED-type containing 1

External IDs

HomoloGene: 123965 GeneCards: ZBED1

Gene ontology
Molecular function	• DNA binding • transposase activity • protein binding • protein dimerization activity • metal ion binding • nucleic acid binding • RNA polymerase II regulatory region sequence-specific DNA binding • transcription factor activity, sequence-specific DNA binding
Cellular component	• cytoplasm • nuclear chromosome • nucleus • actin cytoskeleton
Biological process	• regulation of transcription from RNA polymerase II promoter
Sources:Amigo / QuickGO

Orthologs

Species

Human

Mouse


9189


n/a


ENSG00000214717


n/a


O96006


n/a

RefSeq (mRNA)


NM_004729 NM_001171135 NM_001171136


n/a

RefSeq (protein)


NP_001164606.1 NP_001164607.1 NP_004720.1


n/a

Location (UCSC)

Chr X: 2.49 – 2.5 Mb

n/a

PubMed search

^[1]

n/a

View/Edit Human

Zinc finger BED domain-containing protein 1 is a protein that in humans is encoded by the ZBED1 gene.^[2]^[3]^[4]

References

↑ "Human PubMed Reference:".
↑ Nagase T, Ishikawa K, Suyama M, Kikuno R, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (Apr 1999). "Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 5 (5): 277–86. doi:10.1093/dnares/5.5.277. PMID 9872452.
↑ Esposito T, Gianfrancesco F, Ciccodicola A, Montanini L, Mumm S, D'Urso M, Forabosco A (Mar 1999). "A novel pseudoautosomal human gene encodes a putative protein similar to Ac-like transposases". Hum Mol Genet. 8 (1): 61–7. doi:10.1093/hmg/8.1.61. PMID 9887332.
↑ "Entrez Gene: ZBED1 zinc finger, BED-type containing 1".

Further reading

Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery.". Genome Res. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Ohshima N, Takahashi M, Hirose F (2003). "Identification of a human homologue of the DREF transcription factor with a potential role in regulation of the histone H1 gene". J. Biol. Chem. 278 (25): 22928–38. doi:10.1074/jbc.M303109200. PMID 12663651.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514.
Lim J, Hao T, Shaw C, et al. (2006). "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): 801–14. doi:10.1016/j.cell.2006.03.032. PMID 16713569.
Yamashita D, Komori H, Higuchi Y, et al. (2007). "Human DNA replication-related element binding factor (hDREF) self-association via hATC domain is necessary for its nuclear accumulation and DNA binding". J. Biol. Chem. 282 (10): 7563–75. doi:10.1074/jbc.M607180200. PMID 17209048.
Yamashita D, Sano Y, Adachi Y, et al. (2007). "hDREF Regulates Cell Proliferation and Expression of Ribosomal Protein Genes". Mol. Cell. Biol. 27 (6): 2003–13. doi:10.1128/MCB.01462-06. PMC 1820502. PMID 17220279.

PDB gallery

2ct5: Solution Structure of the zinc finger BED domain of the zinc finger BED domain containing protein 1

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